Measuring absolute expression with microarrays with a calibrated reference sample and an extended signal intensity range.
Authors: Authors: Dudley AM, Aach J, Steffen MA, Church GM.
Proc Natl Acad Sci U S A
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Proc Natl Acad Sci U S A
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Discrimination between paralogs using microarray analysis: application to the Yap1p and Yap2p transcriptional networks.
Authors: Authors: Cohen BA, Pilpel Y, Mitra RD, Church GM.
Mol Biol Cell
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Mol Biol Cell
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Computational identification of transcription factor binding sites via a transcription-factor-centric clustering (TFCC) algorithm.
Nucleotides of transcription factor binding sites exert interdependent effects on the binding affinities of transcription factors.
Identification of foreign gene sequences by transcript filtering against the human genome.
Authors: Authors: Weber G, Shendure J, Tanenbaum DM, Church GM, Meyerson M.
Nat Genet
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Nat Genet
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Correlation between transcriptome and interactome mapping data from Saccharomyces cerevisiae.
Selection analyses of insertional mutants using subgenic-resolution arrays.
Authors: Authors: Badarinarayana V, Estep PW, Shendure J, Edwards J, Tavazoie S, Lam F, Church GM.
Nat Biotechnol
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Nat Biotechnol
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Identifying regulatory networks by combinatorial analysis of promoter elements.
Exploring the DNA-binding specificities of zinc fingers with DNA microarrays.
Authors: Authors: Bulyk ML, Huang X, Choo Y, Church GM.
Proc Natl Acad Sci U S A
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Proc Natl Acad Sci U S A
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Aligning gene expression time series with time warping algorithms.