Alignment and structure prediction of divergent protein families: periplasmic and outer membrane proteins of bacterial efflux pumps.
A weight matrix for binding recognition by the redox-response regulator ArcA-P of Escherichia coli.
Authors: Authors: McGuire AM, De Wulf P, Church GM, Lin EC.
Mol Microbiol
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Mol Microbiol
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Modeling gene expression with differential equations.
A comprehensive library of DNA-binding site matrices for 55 proteins applied to the complete Escherichia coli K-12 genome.
Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation.
Authors: Authors: Roth FP, Hughes JD, Estep PW, Church GM.
Nat Biotechnol
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Nat Biotechnol
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Quantitative whole-genome analysis of DNA-protein interactions by in vivo methylase protection in E. coli.
Methods for generating precise deletions and insertions in the genome of wild-type Escherichia coli: application to open reading frame characterization.
Electrophore mass tag dideoxy DNA sequencing.
Authors: Authors: Xu L, Bian N, Wang Z, Abdel-Baky S, Pillai S, Magiera D, Murugaiah V, Giese RW, Wang P, O'Keeffe T, Abushamaa H, Kutney L, Church G, Carson S, Smith D, Park M, Wronka J, Laukien F.
Anal Chem
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Anal Chem
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Multiplex sequencing of 1.5 Mb of the Mycobacterium leprae genome.
Authors: Authors: Smith DR, Richterich P, Rubenfield M, Rice PW, Butler C, Lee HM, Kirst S, Gundersen K, Abendschan K, Xu Q, Chung M, Deloughery C, Aldredge T, Maher J, Lundstrom R, Tulig C, Falls K, Imrich J, Torrey D, Engelstein M, Breton G, Madan D, Nietupski R, Seitz B, Connelly S, McDougall S, Safer H, Gibson R, Doucette-Stamm L, Eiglmeier K, Bergh S, Cole ST, Robison K, Richterich L, Johnson J, Church GM, Mao JI.
Genome Res
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Genome Res
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Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12.