Computational discovery of sense-antisense transcription in the human and mouse genomes.
Genome-scale metabolic model of Helicobacter pylori 26695.
Authors: Authors: Schilling CH, Covert MW, Famili I, Church GM, Edwards JS, Palsson BO.
J Bacteriol
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J Bacteriol
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Computation-based discovery of related transcriptional regulatory modules and motifs using an experimentally validated combinatorial model.
Authors: Authors: Halfon MS, Grad Y, Church GM, Michelson AM.
Genome Res
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Genome Res
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Measuring absolute expression with microarrays with a calibrated reference sample and an extended signal intensity range.
Authors: Authors: Dudley AM, Aach J, Steffen MA, Church GM.
Proc Natl Acad Sci U S A
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Proc Natl Acad Sci U S A
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Discrimination between paralogs using microarray analysis: application to the Yap1p and Yap2p transcriptional networks.
Authors: Authors: Cohen BA, Pilpel Y, Mitra RD, Church GM.
Mol Biol Cell
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Mol Biol Cell
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Computational identification of transcription factor binding sites via a transcription-factor-centric clustering (TFCC) algorithm.
Nucleotides of transcription factor binding sites exert interdependent effects on the binding affinities of transcription factors.
Identification of foreign gene sequences by transcript filtering against the human genome.
Authors: Authors: Weber G, Shendure J, Tanenbaum DM, Church GM, Meyerson M.
Nat Genet
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Nat Genet
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Correlation between transcriptome and interactome mapping data from Saccharomyces cerevisiae.
Selection analyses of insertional mutants using subgenic-resolution arrays.
Authors: Authors: Badarinarayana V, Estep PW, Shendure J, Edwards J, Tavazoie S, Lam F, Church GM.
Nat Biotechnol
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Nat Biotechnol
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